Unfortunately, I don't think that applies here, as I am using a local galaxy instance. I have narrowed the problem down somewhat though.
Tumor genotyper for Exome sequence that detects SNV,CNV, aTumor purity BAM files manipulation can help the biologist in understanding her/his data and perform troubleshooting operations. Detailed overview of all the CloudMap functions is provided in Figure 3, in the user guides, and published workflows available at http://usegalaxy.org/cloudmap. Base-calling the Minion raw fast5 files Simple question pleasehow to generate BED and GFF files I have results from RNA-SEQ (groomer, bowtie2 and sailfish) and need to visualize differential expression Greetings all!! JHD But I didn't change any path I did upgrade from 15.01 to 16.01 recently. And I am now using supervisor uwsgi and htcondor. (I really don't know if it is related) I am not sure where you mapped, but if not at http://usegalaxy.org, "mm10 reference genome" at Galaxy Main may or may not exactly match "mm10 extracted data" from UCSC.
Contribute to usegalaxy-eu/ansible-certbot development by creating an account on GitHub. Ansible Playbook for usegalaxy.org. Contribute to galaxyproject/usegalaxy-playbook development by creating an account on GitHub. Various terraform stuff. Contribute to usegalaxy-eu/terraform development by creating an account on GitHub. A tool for benchmarking Galaxy job destinations. Contribute to usegalaxy-eu/GalaxyBenchmarker development by creating an account on GitHub. Upload the data by clicking the “Get Data” link in the left menu and then choosing “Upload File from your computer”. Drag and drop your sequence files into the resulting menu like so. The larger the history, the longer it takes to compress it into an archive and later download it. Uncompress the archive once you have it locally to access individual datasets.
Podívejte se na Twitteru na tweety k tématu #fastq. Přečtěte si, co říkají ostatní, a zapojte se do konverzace. The HA_SNPS_vcf file you are mentioning is a file from the CloudMap workflow and lists 112061 SNPs present in CB4856 with their coordinates in Wormbase release WS220 (a.k.a. ce10) of the reference N2 genome. Galaxy RNA workbench. Contribute to bgruening/galaxy-rna-workbench development by creating an account on GitHub. A collection of tools for Hi-C data analysis. Contribute to mdozmorov/HiC_tools development by creating an account on GitHub. Contribute to rjansen1984/Myfair-SEEK development by creating an account on GitHub. Contribute to dsobral/summerschool development by creating an account on GitHub. Galaxy wrappers for applications by JetBrains Research Biolabs - JetBrains-Research/galaxy-applications
Galaxy wrappers for NCBI Blast+ and related Blast tools. - peterjc/galaxy_blast Author summary The innate immune response is a double-edged sword. It must protect the host from pathogens while avoiding accidental recognition of “self” molecular patterns, which can lead to autoimmune reactions. We selected cell lines that have accompanying ChIP-sequencing data. In all of the analyzed cells, we observed ∼40% of ERVs at detectable levels (Fig. 1B). K562 cells expressed the highest level of ERVs, not because they expressed more ERV… In G1 cells, Scc2 loads and maintains cohesin on chromosomes by counteracting a Wapl-independent releasing activity, which is neutralized in S phase by CDK1. Database URL: http://usegalaxy.org.}, Note={[PubMed Central:\href{http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3092608}{PMC3092608}] [DOI:\href{http://dx.doi.org/10.1093/database/bar011}{10.1093/database/bar011}] [PubMed:\href{http://www… Command-line utilities to assist in developing tools for the Galaxy Project. - galaxyproject/planemo
Yes, use Galaxy to retrieve ("fetch") your sequences. Make sure you choose interval rather than FASTA format for the output, and you'll have a tab-delimited file
